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This is as per the gitignore manpage, and from my experience - how git functions. However, doesn't seem egit is reading this file, which leaves a user with an undesired workaround or maintaining a per-project .gitignore file.
*** Bug 451878 has been marked as a duplicate of this bug. ***
This depends on JGit bug 430194 for checking $XDG_CONFIG_HOME.
Bug 430194 is not a prerequisite for this bug. Supporting $HOME/.config/git/ignore would be helpful even without full support for $XDG_CONFIG_HOME.
A workaround for this EGit bug is the following (redundant for command-line git): $ git config --global core.excludesfile '~/.config/git/ignore'
https://git.eclipse.org/r/c/jgit/jgit/+/202560 was merged as faefa90f990858db7bec199501cb37f2631c43d0