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As part of the work for Bug 472765 I identified that versions of GDB >= 7.6 did not work as expected when use directory lookup source containers. See https://git.eclipse.org/r/#/c/52068/7/dsf-gdb/org.eclipse.cdt.tests.dsf.gdb/src/org/eclipse/cdt/tests/dsf/gdb/tests/tests_7_6/SourceLookupTest_7_6.java@41 for some discussion on the issue. I'll pull the relevant tests out of Bug 472765 so they can be part of this bug for further investigation.
Gerrit change https://git.eclipse.org/r/57181 was merged to [master]. Commit: http://git.eclipse.org/c/cdt/org.eclipse.cdt.git/commit/?id=cc2099c4a0b1c095cc70f55f758051c2dc1691cd